OBO Foundry dashboard analysis¶

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/tmp/ipykernel_3426/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            19
RDF/XML Syntax    17
unknown           11
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 36 4510.083333 17980.805947 0.0 1.5 256.0 2073.75 124680.0
Declaration 36 964.937500 3296.792151 0.0 9.0 102.0 758.75 22818.0
SubClassOf 34 1082.125000 3585.565587 0.0 0.0 39.0 878.00 24611.0
ObjectPropertyDomain 32 23.916667 31.345591 0.0 0.0 17.5 26.00 133.0
ObjectPropertyRange 32 26.020833 32.888910 0.0 0.0 18.5 30.00 144.0
DataPropertyRange 28 9.645833 19.588848 0.0 0.0 1.0 9.25 97.0
SubObjectPropertyOf 27 34.916667 53.507539 0.0 0.0 6.5 51.25 214.0
InverseObjectProperties 27 10.270833 25.686108 0.0 0.0 1.0 8.25 126.0
DisjointClasses 26 267.041667 1770.579229 0.0 0.0 1.0 7.75 12277.0
ClassAssertion 25 96.812500 305.514540 0.0 0.0 1.0 20.00 1815.0
DataPropertyDomain 25 9.208333 34.500668 0.0 0.0 1.0 4.00 235.0
EquivalentClasses 22 46.979167 94.162713 0.0 0.0 0.0 61.25 395.0
TransitiveObjectProperty 21 2.729167 4.216177 0.0 0.0 0.0 4.25 15.0
SubAnnotationPropertyOf 16 9.729167 33.317135 0.0 0.0 0.0 8.50 228.0
SubDataPropertyOf 15 4.500000 11.332499 0.0 0.0 0.0 1.25 63.0
SymmetricObjectProperty 14 2.375000 4.508267 0.0 0.0 0.0 1.25 16.0
FunctionalDataProperty 14 1.000000 1.901847 0.0 0.0 0.0 1.25 8.0
FunctionalObjectProperty 14 1.812500 3.461990 0.0 0.0 0.0 1.25 11.0
InverseFunctionalObjectProperty 13 1.395833 3.064829 0.0 0.0 0.0 1.00 12.0
AnnotationPropertyRangeOf 13 5.520833 19.910427 0.0 0.0 0.0 1.00 134.0
IrrefexiveObjectProperty 12 2.562500 5.812336 0.0 0.0 0.0 0.25 22.0
ObjectPropertyAssertion 11 96.895833 338.163264 0.0 0.0 0.0 0.00 2051.0
AsymmetricObjectProperty 10 2.000000 4.753498 0.0 0.0 0.0 0.00 16.0
DisjointUnion 7 5.312500 18.465789 0.0 0.0 0.0 0.00 116.0
AnnotationPropertyDomain 6 0.250000 0.933992 0.0 0.0 0.0 0.00 6.0
EquivalentObjectProperties 6 1.333333 5.423877 0.0 0.0 0.0 0.00 36.0
DataPropertyAssertion 6 110.145833 537.649256 0.0 0.0 0.0 0.00 3617.0
DifferentIndividuals 5 0.375000 1.282036 0.0 0.0 0.0 0.00 6.0
DisjointObjectProperties 5 0.416667 1.513532 0.0 0.0 0.0 0.00 8.0
SubPropertyChainOf 5 0.770833 2.722949 0.0 0.0 0.0 0.00 13.0
ReflexiveObjectProperty 5 0.104167 0.308709 0.0 0.0 0.0 0.00 1.0
SameIndividual 3 0.645833 2.794292 0.0 0.0 0.0 0.00 17.0
NegativeObjectPropertyAssertion 2 0.041667 0.201941 0.0 0.0 0.0 0.00 1.0
Rule 2 0.250000 1.279960 0.0 0.0 0.0 0.00 8.0
EquivalentDataProperties 2 0.187500 0.914569 0.0 0.0 0.0 0.00 5.0
DatatypeDefinition 2 0.416667 2.743141 0.0 0.0 0.0 0.00 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 37 3820.687500 11200.132889 0.0 19.5 223.0 2579.00 70987.0
ObjectUnionOf 26 12.562500 21.188020 0.0 0.0 2.0 13.00 88.0
ObjectAllValuesFrom 24 19.687500 34.690213 0.0 0.0 0.5 27.25 162.0
ObjectSomeValuesFrom 22 131.729167 307.541503 0.0 0.0 0.0 94.00 1478.0
ObjectIntersectionOf 21 31.687500 92.705013 0.0 0.0 0.0 16.25 470.0
ObjectExactCardinality 19 4.770833 17.060892 0.0 0.0 0.0 3.00 114.0
DataExactCardinality 15 1.937500 3.726879 0.0 0.0 0.0 3.00 14.0
DataHasValue 13 29.875000 81.281393 0.0 0.0 0.0 4.00 494.0
DataAllValuesFrom 12 0.895833 1.904525 0.0 0.0 0.0 0.25 8.0
ObjectComplementOf 11 1.937500 4.887702 0.0 0.0 0.0 0.00 22.0
ObjectOneOf 9 11.958333 54.720939 0.0 0.0 0.0 0.00 272.0
ObjectMinCardinality 9 0.854167 2.405575 0.0 0.0 0.0 0.00 11.0
ObjectHasValue 9 5.895833 23.130747 0.0 0.0 0.0 0.00 121.0
DataSomeValuesFrom 7 0.541667 1.336211 0.0 0.0 0.0 0.00 4.0
ObjectMaxCardinality 5 19.458333 128.994798 0.0 0.0 0.0 0.00 894.0
DataMinCardinality 3 0.333333 2.024671 0.0 0.0 0.0 0.00 14.0
DataMaxCardinality 3 1.666667 9.086659 0.0 0.0 0.0 0.00 61.0

OBO Score (Experimental)

ontology score score_dash score_impact
30 OBO 0.337 0.571 0.104
19 IAO 0.300 0.600 0.000
31 OEO 0.285 0.571 0.000
44 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
17 FOAF 0.281 0.333 0.229
34 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
33 PROVO 0.273 0.504 0.042
3 CCO 0.252 0.504 0.000
36 SEMMD 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
35 SAREF 0.241 0.482 0.000
21 MAMBO 0.234 0.467 0.000
38 SO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
41 UO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
39 SP 0.234 0.467 0.000
32 PMD 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
45 mvc 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
42 WILD 0.200 0.400 0.000
46 periodictable 0.200 0.400 0.000
37 SKOS_MDO 0.200 0.400 0.000
40 SSN 0.189 0.378 0.000
47 ssos 0.155 0.311 0.000
1 BWMD-DOMAIN 0.000 0.000 0.000
15 EMMO_mechanical_testing 0.000 0.000 0.000
16 EMMO_microstructure 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
20 LPBFO 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
28 NanoMine 0.000 0.000 0.000
2 BWMD-MID 0.000 0.000 0.000
5 CIF 0.000 0.000 0.000
43 dcterms 0.000 0.000 0.000
23 MOL_TENSILE 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 48.0 0.189146 0.108909 0.0 0.1805 0.228 0.2735 0.337
score_dash 48.0 0.370375 0.212943 0.0 0.3275 0.444 0.5040 0.600
score_impact 48.0 0.007812 0.036347 0.0 0.0000 0.000 0.0000 0.229

OBO dependency graph